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pathway_prediction_in_batch_mode

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Pathway Prediction in Batch Mode

Pathway prediction in enviPath can now be performed in batch mode. This feature accepts a .tsv file containing SMILES representations and compound names as input. It processes the file and returns a .tsv output containing the predicted transformation products (TPs) along with relevant metadata. Batch mode is designed to support experimentalists in generation of suspect screening lists, ideal for non-target analysis.

Input requirements

The batch prediction tool requires the following three inputs:

  • Input file: A .tsv file containing SMILES strings and compound names, without a header. A template input file can be downloaded here.
  • Relative Reasoning model: The relative reasoning model that will be used for the predictions. A default model is pre-selected, but users can also choose a different model if preferred.
  • Number of transformation products (TPs): The maximum number of TPs to predict per input compound.
pathway_prediction_in_batch_mode.1745845813.txt.gz · Last modified: 2025/04/28 13:10 by shankar