enviPath Wiki

User Tools

Site Tools

Trace:
pathway

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
pathway [2024/01/22 09:44] – shankarpathway [2024/02/01 12:24] (current) – shankar
Line 23: Line 23:
 | ::: | ::: |:::| ::: |404 - Not Found| | ::: | ::: |:::| ::: |404 - Not Found|
 | ::: | ::: | ::: | ::: |500 - Internal Server Error | | ::: | ::: | ::: | ::: |500 - Internal Server Error |
 +
 +==== POST ====
 +
 +^ URI              ^ Parameter            ^ Accept Types          ^ Result ^ Status Codes ^
 +|/pathway    |//smilesinput//| | List of all pathways of all packages that the user has permission to read. | 303 - See Other|
 +| ::: | //reverse// | ::: | ::: | 500 - Internal Server Error|
 +| ::: |//name// |:::| ::: | |
 +| ::: |// description// | ::: | ::: |::: |
 +| ::: |// rootOnly// | ::: | ::: |::: |
 +| ::: |// selectedSetting// | ::: | There are 3 ways to select the [[settings|setting]] for the pathway:      * Do not specify any setting options (uses default setting) * Provide a setting URI with selectedSetting * Provide further setting parameters to create a new setting as defined in the Setting REST API.|::: |
 +| ::: |// <settingParams>// | ::: |  |::: |
 +|/package/<id>/pathway   |//smilesinput//| | Creates a new predicted pathway in the package given by the URI. The redirect points to the URI of the new pathway. | 303 - See Other|
 +| ::: | //reverse// | ::: | ::: | 401 - Unauthorized|
 +| ::: |//name// |:::| ::: |500 - Internal Server Error|
 +| ::: |//selectedSetting// |:::| ::: |:::|
 +| ::: |//<settingParams>// |:::| ::: |:::|
 +|/package/<id>/pathway/<id>|//pathwayName//| | Modify the pathway identified by the URI. Set setAsDefaultName to "setAsDefaultName" to use the new alias as default name. | 200 - OK|
 +| ::: | //setAsDefaultName// | ::: | ::: | 401 - Unauthorized|
 +| ::: | //pathwayDescription// | ::: | ::: | 404 - Not Found|
 +| ::: | //scenario - URI of the scenario// | ::: | ::: | 500 - Internal Server Error|
 +|/package/<id>/pathway/<id>/node|//nodeAsSmiles//| | Adds a new node to the pathway. | 200 - OK|
 +| ::: | //nodeReason// | ::: | ::: | 401 - Unauthorized|
 +| ::: | //nodeName// | ::: | ::: | 404 - Not Found|
 +| ::: | //nodeDepth// | ::: | ::: | 500 - Internal Server Error|
 +|/package/<id>/pathway/<id>/node/<id>|//nodeName//| | Modify the node identified by the URI. Set setAsDefaultName to "setAsDefaultName" to use the new alias as default name. | 200 - OK|
 +| ::: | //setAsDefaultName// | ::: | ::: | 401 - Unauthorized|
 +| ::: | //nodeDescription// | ::: | ::: | 404 - Not Found|
 +| ::: | //nodeDescription// | ::: | ::: | 500 - Internal Server Error|
 +|/package/<id>/pathway/<id>/edge|//edgeAsSmirks//| | Adds a new edge to the pathway. | 200 - OK|
 +| ::: | //edgeReason// | ::: | ::: | 401 - Unauthorized|
 +| ::: | //products// | ::: | ::: | 404 - Not Found|
 +| ::: | //educts// | ::: | ::: | 500 - Internal Server Error|
 +| ::: | //multistep// | ::: | ::: | :::|
 +|/package/<id>/pathway/<id>/edge/<id>|//edgeName//| | Modify the edge identified by the URI. Set setAsDefaultName to "setAsDefaultName" to use the new alias as default name. | 200 - OK|
 +| ::: | //setAsDefaultName// | ::: | ::: | 401 - Unauthorized|
 +| ::: | //edgeDescription// | ::: | ::: | 404 - Not Found|
 +| ::: | ::: | ::: | ::: | 500 - Internal Server Error|
 +
 +
 +==== DELETE ====
 +
 +^ URI              ^ Parameter            ^ Accept Types          ^ Result ^ Status Codes ^
 +|/pathway| | | Delete all pathways the user has write access on (does not delete created compounds or reactions) | 303 - See Other|
 +| ::: |::: | ::: | ::: | 500 - Internal Server Error|
 +| /package/<id>/pathway |  |  | Delete all pathways in the package given by the URI. | 303 - See Other|
 +| ::: | ::: | ::: | ::: | 401 - Unauthorized|
 +| ::: | ::: | ::: | ::: | 500 - Internal Server Error|
 +| /package/<id>/pathway/<id>|  |  | Delete the pathway identified by the URI. | 303 - See Other|
 +| ::: | ::: | ::: | ::: | 401 - Unauthorized|
 +| ::: | ::: | ::: | ::: | 404 - Not Found|
 +| ::: | ::: | ::: | ::: | 500 - Internal Server Error|
 +| /package/<id>/pathway/<id>/node/<id> |  |  | Remove node from pathway. | 303 - See Other|
 +| ::: | ::: | ::: | ::: | 401 - Unauthorized|
 +| ::: | ::: | ::: | ::: | 500 - Internal Server Error|
 +
 +
 +
 +==== PUT ====
 +
 +Not Implemented.
 +
 +
 +
 +
 +
 +
 +
 +
 +
 +
 +
 +
 +
  
pathway.1705916688.txt.gz · Last modified: 2024/01/22 09:44 by shankar