Differences

This shows you the differences between two versions of the page.

--- packages [2024/05/08 08:36] – [Navigation] strich
+++ packages [2025/03/04 12:48] (current) – [Eawag-SLUDGE] hafner
@@ Line 20: / Line 20: @@
-The [[https://envipath.org/package/5882df9c-dae1-4d80-a40e-db4724271456|Eawag-SOIL]] package contains data on the biotransformation of pesticides in soil reported in draft assessment reports (DARs) made publically available through the European Food Safety Authority ([[https://www.efsa.europa.eu/en|EFSA]]). There are 317 [[pathways|pathways]] included in the package, with 1784 [[compounds|compounds]] and 2447 [[reactions|reactions]]. The package also contains information on different experimental conditions that are stored in [[https://envipath.org/scenario|scenarios]]. [[https://envipath.org/compound|Compounds]] in the [[https://envipath.org/pathway|pathway]] are associated with a given [[https://envipath.org/scenario|scenario]] if they have been observed under the specific experimental conditions. If available, a biotransformation half-life (DT50) value is additionally associated with a given compound in the pathway and a specific scenario. There are currently 895 compounds with half-lives provided in this package. More details concerning enviPath conventions that were used to store specific data from DAR, and their description can be found [[https://envipath.org/package/5882df9c-dae1-4d80-a40e-db4724271456|here]]
+The [[https://envipath.org/package/5882df9c-dae1-4d80-a40e-db4724271456|Eawag-SOIL]] package contains data on the biotransformation of pesticides in soil reported in draft assessment reports (DARs) made publically available through the European Food Safety Authority (EFSA). DARs for specific compounds are available [[https://www.efsa.europa.eu/en/calls/consultations|at the public consultations website]] from the EFSA. There are 317 [[pathways|pathways]] included in the package, with 1784 [[compounds|compounds]] and 2447 [[reactions|reactions]]. The package also contains information on different experimental conditions that are stored in [[https://envipath.org/scenario|scenarios]]. [[https://envipath.org/compound|Compounds]] in the [[https://envipath.org/pathway|pathway]] are associated with a given [[https://envipath.org/scenario|scenario]] if they have been observed under the specific experimental conditions. If available, a biotransformation half-life (DT50) value is additionally associated with a given compound in the pathway and a specific scenario. There are currently 895 compounds with half-lives provided in this package. More details concerning enviPath conventions that were used to store specific data from DARs, and their description can be found in our paper [[https://pubs.rsc.org/en/content/articlelanding/2017/em/c6em00697c|here]].
 ===== Eawag-SLUDGE =====
-The [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038|EAWAG-SLUDGE]] package contains biotransformation data extracted from scientific publications for microbially mediated processes in biological wastewater treatment. There are 184 [[pathways|pathways]] included in this package, with 1070 [[compounds|compounds]] and 521 [[reactions|reactions]]. The biotransformation reaction schemes are stored as [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/pathway|pathways]]. The experimental conditions and additional information (e. g. sludge source) are collected in the [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/scenario|scenario]] objects. Any observed transformation products ([[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/compound|compounds]]) are linked to their corresponding experimental metadata ([[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/scenario|scenario]]). Kinetic parameters (rate constants and/or half-lives) including corresponding scenarios are indicated for compounds for which such data is available. There are currently 172 compounds with reported rate constants and/or half-lives within this package.
+The [[https://envipath.org/package/521c547a-fd2a-491c-ad5b-7eaa1577fb65|EAWAG-SLUDGE]] package contains biotransformation data extracted from scientific publications for microbially mediated processes in biological wastewater treatment. There are 183 [[pathways|pathways]] included in this package, with 1067 [[compounds|compounds]] and 494 [[reactions|reactions]]. The biotransformation reaction schemes are stored as [[https://envipath.org/package/521c547a-fd2a-491c-ad5b-7eaa1577fb65/pathway|pathways]]. The experimental conditions and additional information (e. g. sludge source) are provided in [[https://envipath.org/package/521c547a-fd2a-491c-ad5b-7eaa1577fb65/scenario|scenarios]]. Any observed transformation products ([[https://envipath.org/package/521c547a-fd2a-491c-ad5b-7eaa1577fb65/compound|compounds]]) are linked to their corresponding experimental metadata ([[https://envipath.org/package/521c547a-fd2a-491c-ad5b-7eaa1577fb65/scenario|scenario]]). Kinetic parameters (rate constants and/or half-lives) including corresponding scenarios are provided for compounds for which such data is available. There are currently 172 compounds with reported rate constants and/or half-lives within this package.
@@ Line 30: / Line 30: @@
-====== Navigation ======
+==== Navigation ====
 Objects from all packages are shown when the user selects the corresponding category in the main menu (if the user has [[permissions|Permission]].READ). To view the content of a specific package you can choose it on the [[https://envipath.org/package|package]] page. Once you entered it, you have access to the objects contained within this package by clicking on the corresponding object (e.g., Compound, Rule, ...). To create and add new objects to this package enter the desired category, click the "Actions"-button and select e.g. "New Compound". Keep in mind that you can only edit existing entities or add new ones to a package if you have [[permissions|Permission]].WRITE.
-=====Default Package =====
+===Default Package ===